PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G468700.4.p
Common NameLOC101780320, SETIT_000591mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB_related
Protein Properties Length: 637aa    MW: 69276.7 Da    PI: 9.7272
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G468700.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.92e-07537586147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                         r++++  E e lv+av+qlG+g+W+ +  +      +Rt  ++k++w ++
  Seita.5G468700.4.p 537 RMPFSVGEVEALVEAVEQLGTGRWRDVKMHAFdgaDHRTYVDLKDKWKTL 586
                         7899999********************9999899*************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542362.01E-7343419IPR029071Ubiquitin-related domain
PROSITE profilePS500539.286349419IPR000626Ubiquitin domain
PROSITE profilePS5129415.733532591IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.9E-9533588IPR009057Homeodomain-like
SMARTSM007176.4E-7536589IPR001005SANT/Myb domain
SuperFamilySSF466898.87E-15539619IPR009057Homeodomain-like
CDDcd116601.93E-16539588No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0032204Biological Processregulation of telomere maintenance
GO:0042162Molecular Functiontelomeric DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 637 aa     Download sequence    Send to blast
MVSQKRLGYG SRGRQIPAMP RVPNSVRGKR TTRRKKNEMC AFDLLASVAG TLLTDQDSSS  60
YVPNTSGAAT SYARNRKSVK EEYFDEILHL KNVAVKKDCG SGCVVGSGGV SALPRKGNDG  120
LAENSLTRNE DESVLKSLTV KSNMLARDSS VRCTRPCEIS RGLGIICEYG AFGVFHPGSS  180
SSAEAGQAHQ AEPKVIRSKA DGHTAALDSL FDSVDLDGRP PALVEMQHTA DRDDDENSSG  240
CTHPSTTGNE GYKPHFLGNH RIRKLLASKV RKAARNKTSG GMSSKGSKLN FCGKKIPTTR  300
QKVQRTNFKR KKLARGTTPF AKGMLTGATG TSFRMQGQNK SCGSEDYHVK LRIKSFNIPE  360
LFVEIPETAT IGSLKRTVMD VVTSIMEGGL RVGVLLQGKS IQDDSKTLRQ AGICHGEKLN  420
NIDFTLECER QQDSPSGVII AEEMDFVSAD IVEPLARMKY EEPFPGTKGG GGNQQPIKAY  480
PNDSFAGCVH RPVEMASQDA SASLQAIIPV AASDLNALAI VPICKTRRSE FGQRRTRMPF  540
SVGEVEALVE AVEQLGTGRW RDVKMHAFDG ADHRTYVDLK DKWKTLVHTA SISPQQRRGE  600
PVPQELLDRV LSAQAYWSQQ QAKLHGKAPL PEICLA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A6e-555256255105Telomere binding protein TBP1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012701182.10.0PREDICTED: telomere-binding protein 1
SwissprotQ9LL450.0TBP1_ORYSJ; Telomere-binding protein 1
TrEMBLK3XFC20.0K3XFC2_SETIT; Uncharacterized protein
STRINGSi000591m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.15e-76TRF-like 2